Biotinyl-4-nitrophenyl ester — License & Provenance

CAS 33755-53-2 · C16H19N3O5S · MolGod 3D molecular model

Biotinyl-4-nitrophenyl ester (CAS 33755-53-2) — MolGod molecule record: properties, safety, literature and sources for this substance.

COMPUTED — PubChem3D · 3D conformer computed by PubChem using OMEGA; not an experimental structure.

Identity

MolGod Identification NumberMG_460-169-076-71
CAS Registry Number33755-53-2
Name sourcecache cas-*.json field "title" (angielski)
Molecular formulaC16H19N3O5S
PubChem CID83848
InChIKeyYUDNXDTXQPYKCA-YDHLFZDLSA-N
WikidataQ72443580
MolGod molecule recordBiotinyl-4-nitrophenyl ester (CAS 33755-53-2) — molecule record

Geometry provenance

SourcePubChem, record_type=3d (computed conformer)
Endpointhttps://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83848/record/SDF?record_type=3d
Dimensionality3d
Retrieved2026-09-02 04:06:55
Atoms / bonds44 / 46
ModificationNone. Atomic coordinates and connectivity are used unchanged; no geometry was modelled, adjusted or inferred.

Preview

3D molecular model of Biotinyl-4-nitrophenyl ester (CAS 33755-53-2), ball-and-stick representation, rendered from the MolGod STL fileDownload image


Rendered from this exact STL file, not from a second source. Single material — the STL format carries no colour channel. Colours in the preview are assigned by the renderer from the element palette and are not part of the downloadable geometry.

Engraved variant

3D molecular model of Biotinyl-4-nitrophenyl ester (CAS 33755-53-2), engraved variant: element symbols recessed into each atom sphere, rendered from the MolGod STL fileDownload image

The element symbol is cut into the sphere, not printed on it. That single difference is what this variant is for.

Why the preview looks the way it does. A carved letter has no colour of its own — on a pale atom it would disappear into the highlight. The preview is rendered from the mesh itself with ray-traced cavity shading, so recesses darken because they are recessed, not because we painted them. What you see is the geometry you will receive. The element colours follow the same palette as the interactive viewer on this site, so the model and the viewer never disagree about what an atom is.

Element symbols are recessed into the atom spheres. Mesh: 755,396 triangles versus 19,072.

Download engraved variant: Biotinyl-4-nitrophenyl ester-3D-molecular-model-engraved-CAS-33755-53-2.stl (36 MB)
SHA-256 9dbde18af49ff393e2db5af6eef227c856c947914e54f044d6cb3f0531ec79ff
Validation: mesh validity check PASS (re-checked 2026-11-09, after the file was first published); external cross-check NOT PERFORMED for this model
Recommended print scale: FDM (0.4 mm nozzle, 0.2 mm layer) at least 7.2 mm per Å (model about 75 mm across); resin printer (50 µm) at least 1.7 mm per Å (about 18 mm). Below this scale the engraved symbols become too fine to print. The printer limits are typical values assumed by MolGod, not a test of your printer.

Artefact

FormatSTL (binary). Coordinate convention: ångström (Å) — STL itself stores no unit metadata. Slicers read STL as millimetres by default, so set the scale deliberately before printing.
Print scaleRecommended print scale: FDM (0.4 mm nozzle, 0.2 mm layer) at least 3.4 mm per Å (model about 45 mm across); resin printer (50 µm) at least 0.5 mm per Å (about 7 mm). Below this scale the thinnest bond cylinders become too thin to print. The printer limits are typical values assumed by MolGod, not a test of your printer.
DownloadBiotinyl-4-nitrophenyl ester-3D-molecular-model-CAS-33755-53-2.stl (931 KB)
SHA-2560a72cd7e90f1a5671dbc52c44f127cb197e6ecb12cb02842e619d30955dd0cdb
MD57716bf0ed725fc0ec4e5d05792b9f0a3
Size953,684 bytes
Triangles19,072
Mesh44 atom spheres + 52 bond cylinders (one, two or three per bond, by bond order), each a closed outward-oriented solid; the solids intersect by design.
Atomic radiivan der Waals radii from the versioned MolGod table MG2, values from Bondi 1964 (doi:10.1021/j100785a001), checked against the original publication: Table I, p. 443. Used in this model: C 1.70 Å, H 1.20 Å, N 1.55 Å, O 1.52 Å, S 1.80 Å.
The file header declares vdw:MG2.
Sphere scale and bond radius are presentation parameters, not chemical quantities.
ExporterMolGod STL Exporter build 48804cd20b0d
Validatormesh validity check PASS before publication (2026-10-14); independently confirmed by trimesh 5.1.0 and numpy-stl (18496 triangles, watertight, consistent winding, positive volume), checked 2026-09-26T00:14:31Z
Generated2026-10-14T15:52:01Z
The STL format stores no bond-order or colour metadata. Bond order is therefore shown geometrically — one, two or three cylinders per bond, following the PubChem Kekulé structure, in both the canonical and the engraved variant — and preserved as data in this record and in the accompanying metadata.

License

LicenseCC BY-SA 4.0 International
CreatorMolGod Scientific
Required attribution"Biotinyl-4-nitrophenyl ester (CAS 33755-53-2) — 3D molecular model" by MolGod Scientific, licensed under CC BY-SA 4.0 International. Rendered as a triangulated mesh (van der Waals spheres and bond cylinders) from the PubChem-computed 3D conformer; atomic coordinates and connectivity unchanged. Source: https://molgod.org/licenses/stl/33755-53-2/
Wikimedia Commons tag{{Cc-by-sa-4.0}}
Source representationPubChem computed 3D conformer (record_type=3d) — generated by PubChem itself, not supplied by a depositor.
Source rights basisNCBI Molecular Data Usage Policy. NCBI does not itself restrict use or redistribution of molecular data, but does not transfer rights that individual depositors may hold.
Rights assessmentcompatible — MolGod's own determination that this computed conformer may serve as the geometric basis of a derived mesh. This is not a licence grant by the source. The measured basis is that the conformer is computed by PubChem rather than deposited by a third party. A formal legal assessment of downstream rights has not been carried out; that risk is accepted explicitly and recorded in the MolGod decision register (2026-09-25).
Assessment scopeThis assessment covers only the computed 3D conformer used as geometric input. It does not extend to depositor data obtained from PubChem — names, spectra, physicochemical values or anything else.
Source URLPubChem CID 83848
Source license termsNCBI Policies and Disclaimers
Source licensing guidancePubChem data downloads & licensing — PubChem states that an individual data source may provide its own licence terms and that these should be checked per source. This model uses a PubChem-computed conformer, not depositor-supplied data.
Attribution URLhttps://molgod.org/molecule/33755-53-2/
License & provenance URLhttps://molgod.org/licenses/stl/33755-53-2/
ScopeThis license applies to the MolGod-created STL mesh, not automatically to third-party source material.
Licence terms & attributionMolGod licence and attribution rules →

Licence grant. MolGod Scientific, the creator and copyright holder of the STL mesh of MolGod entity MG_460-169-076-71, variant normal (SHA-256 0a72cd7e90f1a5671dbc52c44f127cb197e6ecb12cb02842e619d30955dd0cdb), hereby releases it under the CC BY-SA 4.0 International licence. The release covers the MolGod-created mesh only, not third-party source material (see Scope above).

The license above is the legal instrument and is granted by its official Creative Commons deed. This page is the MolGod provenance record for the artefact; it documents the source and the pipeline, and does not impose any condition beyond those of the license itself.